Origin of the 1918 Spanish influenza virus: a comparative genomic analysis.
Identifieur interne : 001236 ( Main/Exploration ); précédent : 001235; suivant : 001237Origin of the 1918 Spanish influenza virus: a comparative genomic analysis.
Auteurs : Geoff Vana [États-Unis] ; Kristi M. WestoverSource :
- Molecular phylogenetics and evolution [ 1055-7903 ] ; 2008.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ADN concaténé, Génome viral, Virus de la grippe A.
- Espagne, Humains, Phylogénie.
- Wicri :
- geographic : Espagne.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Concatenated.
- geographic : Spain.
- genetics : Genome, Viral, Influenza A virus.
- Humans, Phylogeny.
Abstract
To test the avian-origin hypothesis of the 1918 Spanish influenza virus we surveyed influenza sequences from a broad taxonomic distribution and collected 65 full-length genomes representing avian, human and "classic" swine H1N1 lineages in addition to numerous other swine (H1N2, H3N1, and H3N2), human (H2N2, H3N2, and H5N1), and avian (H1N1, H4N6, H5N1, H6N1, H6N6, H6N8, H7N3, H8N4, H9N2, and H13N2) subtypes. Amino acids from all eight segments were concatenated, aligned, and used for phylogenetic analyses. In addition, the genes of the polymerase complex (PB1, PB2, and PA) were analyzed individually. All of our results showed the Brevig-Mission/1918 strain in a position basal to the rest of the clade containing human H1N1s and were consistent with a reassortment hypothesis for the origin of the 1918 virus. Our genome phylogeny further indicates a sister relationship with the "classic" swine H1N1 lineage. The individual PB1, PB2, and PA phylogenies were consistent with reassortment/recombination hypotheses for these genes. These results demonstrate the importance of using a complete-genome approach for addressing the avian-origin hypothesis and predicting the emergence of new pandemic influenza strains.
DOI: 10.1016/j.ympev.2008.02.003
PubMed: 18353690
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000265
- to stream PubMed, to step Curation: 000265
- to stream PubMed, to step Checkpoint: 000229
- to stream Ncbi, to step Merge: 000278
- to stream Ncbi, to step Curation: 000278
- to stream Ncbi, to step Checkpoint: 000278
- to stream Main, to step Merge: 001247
- to stream Main, to step Curation: 001236
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Origin of the 1918 Spanish influenza virus: a comparative genomic analysis.</title>
<author><name sortKey="Vana, Geoff" sort="Vana, Geoff" uniqKey="Vana G" first="Geoff" last="Vana">Geoff Vana</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Biology, Winthrop University, Rock Hill, SC 29733, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, Winthrop University, Rock Hill, SC 29733</wicri:regionArea>
<wicri:noRegion>SC 29733</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Westover, Kristi M" sort="Westover, Kristi M" uniqKey="Westover K" first="Kristi M" last="Westover">Kristi M. Westover</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2008">2008</date>
<idno type="RBID">pubmed:18353690</idno>
<idno type="pmid">18353690</idno>
<idno type="doi">10.1016/j.ympev.2008.02.003</idno>
<idno type="wicri:Area/PubMed/Corpus">000265</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000265</idno>
<idno type="wicri:Area/PubMed/Curation">000265</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000265</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000229</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000229</idno>
<idno type="wicri:Area/Ncbi/Merge">000278</idno>
<idno type="wicri:Area/Ncbi/Curation">000278</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000278</idno>
<idno type="wicri:doubleKey">1055-7903:2008:Vana G:origin:of:the</idno>
<idno type="wicri:Area/Main/Merge">001247</idno>
<idno type="wicri:Area/Main/Curation">001236</idno>
<idno type="wicri:Area/Main/Exploration">001236</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Origin of the 1918 Spanish influenza virus: a comparative genomic analysis.</title>
<author><name sortKey="Vana, Geoff" sort="Vana, Geoff" uniqKey="Vana G" first="Geoff" last="Vana">Geoff Vana</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Biology, Winthrop University, Rock Hill, SC 29733, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, Winthrop University, Rock Hill, SC 29733</wicri:regionArea>
<wicri:noRegion>SC 29733</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Westover, Kristi M" sort="Westover, Kristi M" uniqKey="Westover K" first="Kristi M" last="Westover">Kristi M. Westover</name>
</author>
</analytic>
<series><title level="j">Molecular phylogenetics and evolution</title>
<idno type="ISSN">1055-7903</idno>
<imprint><date when="2008" type="published">2008</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>DNA, Concatenated (genetics)</term>
<term>Genome, Viral (genetics)</term>
<term>Humans</term>
<term>Influenza A virus (genetics)</term>
<term>Phylogeny</term>
<term>Spain</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN concaténé (génétique)</term>
<term>Espagne</term>
<term>Génome viral (génétique)</term>
<term>Humains</term>
<term>Phylogénie</term>
<term>Virus de la grippe A (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Concatenated</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>Spain</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome, Viral</term>
<term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN concaténé</term>
<term>Génome viral</term>
<term>Virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Humans</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Espagne</term>
<term>Humains</term>
<term>Phylogénie</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Espagne</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">To test the avian-origin hypothesis of the 1918 Spanish influenza virus we surveyed influenza sequences from a broad taxonomic distribution and collected 65 full-length genomes representing avian, human and "classic" swine H1N1 lineages in addition to numerous other swine (H1N2, H3N1, and H3N2), human (H2N2, H3N2, and H5N1), and avian (H1N1, H4N6, H5N1, H6N1, H6N6, H6N8, H7N3, H8N4, H9N2, and H13N2) subtypes. Amino acids from all eight segments were concatenated, aligned, and used for phylogenetic analyses. In addition, the genes of the polymerase complex (PB1, PB2, and PA) were analyzed individually. All of our results showed the Brevig-Mission/1918 strain in a position basal to the rest of the clade containing human H1N1s and were consistent with a reassortment hypothesis for the origin of the 1918 virus. Our genome phylogeny further indicates a sister relationship with the "classic" swine H1N1 lineage. The individual PB1, PB2, and PA phylogenies were consistent with reassortment/recombination hypotheses for these genes. These results demonstrate the importance of using a complete-genome approach for addressing the avian-origin hypothesis and predicting the emergence of new pandemic influenza strains.</div>
</front>
</TEI>
<affiliations><list><country><li>États-Unis</li>
</country>
</list>
<tree><noCountry><name sortKey="Westover, Kristi M" sort="Westover, Kristi M" uniqKey="Westover K" first="Kristi M" last="Westover">Kristi M. Westover</name>
</noCountry>
<country name="États-Unis"><noRegion><name sortKey="Vana, Geoff" sort="Vana, Geoff" uniqKey="Vana G" first="Geoff" last="Vana">Geoff Vana</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/H2N2V1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001236 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001236 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= H2N2V1 |flux= Main |étape= Exploration |type= RBID |clé= pubmed:18353690 |texte= Origin of the 1918 Spanish influenza virus: a comparative genomic analysis. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:18353690" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a H2N2V1
This area was generated with Dilib version V0.6.33. |